The research group ATLAS of GdR MADICS and the Paris Brain Institute (ICM) are organizing a 2-days workshop in Paris, on March, 9-10 2020, with the support of the ICM Centre for Neuroinformatics. The objective of the workshop is to bring together fellow statisticians, computer scientists, signal and image processors, neuroscientists as well as doctors, biologists and people from the industry eager to learn the ways machine learning (both traditional and deep learning) can be used to analyse medical images (histology and neuroimaging).
Registration to the workshop is mandatory and limited to 30 persons. Registration includes coffee breaks and lunchs for both days. Registration is closed!
Prerequisites
- Programming knowledge in languages such as Python, Matlab or R
- Own laptop
Organizers
- Ninon Burgos, CNRS researcher at the Brain and Spine Institute (ICM)
- Cedric Wemmert, Professor in Computer Science, Strasbourg
- Charlotte Laclau, Associate Professor, Laboratoire Hubert Curien
Detailed Program - TBA
All lab works will be in Python and on Google Colab. Here you can find an introduction to python : here.Day 1 - March 9th
- 9:00 - 10:30 / Introduction to machine learning and scikit-learn (slide, notebook)
- 10:30 - 11:00 / Coffee break
- 11:00 - 12:30 / Introduction to classification models
- 12:30 - 13:30 / Lunch break
- 13:30 - 15:00 / Lab work : Histological Images Analysis (slide, notebook)
- 15:00 - 15:30 / Coffee break
- 15:30 - 17:00 / Lab Work : Classification of histological images
Day 2 - March 10th
- 9:00 - 10:30 / Introduction to deep learning and PyTorch (slide, notebook)
- 10:30 - 11:00 / Coffee break
- 11:00 - 12:30 / Deep learning applied to neuroimaging (slide)
- 12:30 - 13:30 / Lunch break
- 13:30 - 15:00 / Lab work : CNNs for the computer-aided diagnosis of Alzheimer's disease (notebook)
- 15:00 - 15:30 / Coffee break
- 15:30 - 17:00 / Lab work: Image synthesis using GANs (notebook)
Speakers and Lab Supervisors
Ninon Burgos (CNRS researcher), Germain Forestier (Professor in Computer Science), Elina Thibeau-Sutre (Early Stage Researcher), Jonathan Weber (Associate professor in Computer Science), Cedric Wemmert (Professor in Computer Science), Charlotte Laclau (Associate Professor in Computer Science), Johann Faouzi (Early Stage Researcher)